The most "helpful" combination for a relaxed story run is usually:
Then in-game, type: run startup
survey all — Instantly surveys every planet in the galaxy, saving significant time during exploration. : console commands starsector
It sounds like you are looking for console commands to help with the "story" or campaign layer of Starsector, likely to make your life easier, skip grinding, or fix bugs. The most "helpful" combination for a relaxed story